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Need help with the data analysis.

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I'm doing a pedigree analysis for inherited disease such as thalassemia and G6PD for my final year project.

Aizzat

Posted Sunday, March 3, 2013 - Post #31386

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GenoPro version: 2.5.4.1
Last Login: Sunday, May 19, 2013
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Hey guys, I'm new here, and I'm doing a pedigree analysis for inherited disease such as thalassemia and G6PD for my final year project.

I want to know if genopro can generate a report that include how many individuals in a genomap, how many male and female, how many first cousin marriage are there. So can anyone help me?
It would help a lot if you can give me a suggestion to improve my thesis writing.

I'll put your name in my thesis... Wink

Thank you very much.

Edited: Wednesday, March 6, 2013 by GenoProSupport

GenoPro Administrator - Gamma User - Important Contributor

genome

Posted Sunday, March 3, 2013 - Post #31388

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FamilyTrees.GenoPro.com
GenoPro version: 3.1.0.1
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GenoPro has a powerful Report Generator that enables most requirements to be met with a knowledge of Javascript and the GenoPro SDK.

Your statistics can be produced with a fairly simple Javascript

<%[

var Stats = {}, idx, obj, map, map0=GenoMaps(0).Name;

// Count genders of Individuals in each GenoMap

for (idx=0; idx<Individuals.Count; idx++) {

obj = Individuals(idx);

map = (obj.Position.GenoMap ? obj.Position.GenoMap : map0);

if (!Stats[map]) {

Stats[map]={};

Stats[map].M=0; Stats[map].F=0; Stats[map].P=0;Stats[map].C=0;

}

Stats[map][obj.Gender.ID]++;

}

// Count 1st Cousin 'families' in each GenoMap

for (idx = 0; idx<Families.Count;idx++) {

obj = Families(idx);

map = (obj.Position.GenoMap ? obj.Position.GenoMap : map0);

if ((obj.Parents(1).Mother.Family.ID != '' &&

(obj.Parents(1).Mother.Family.ID == (obj.Parents(0).Mother.Family.ID || obj.Parents(0).Father.Family.ID))) ||

(obj.Parents(1).Father.Family.ID != '' &&

(obj.Parents(1).Father.Family.ID == (obj.Parents(0).Mother.Family.ID || obj.Parents(0).Father.Family.ID)))) Stats[map].C++;

}

for (idx=0; idx<GenoMaps.Count; idx++) {

map = GenoMaps(idx).Name;

if (Stats[map]) Report.LogComment(map+': Males '+Stats[map].M + '; Females '+Stats[map].F + '; 1st Cousin Families '+Stats[map].C, '#000000');

}

Report.AbortReport();

]%>

I have attached to this post a zipped custom report 'skin' using the above script, download it and unzip into a folder BELOW your GenoPro skins folder and then run as a GenoPro report.

Sample output in the 'Generate Report' Message Log:

Generating report to 'D:\Users\Public\GenoPro Reports\test\'

Cloning document HarryPotter...

Opening configuration file Config.xml for skin '\Stats\* (Statistics)'...

Loading Dictionary.xml...

[0.00] Processing template 'Stats.js'...

Potter: Males 13; Females 6; 1st Cousin Families 0

Weasley: Males 11; Females 7; 1st Cousin Families 0

Black: Males 32; Females 25; 1st Cousin Families 1

Gaunt: Males 4; Females 2; 1st Cousin Families 0

Hogwarts: Males 35; Females 27; 1st Cousin Families 0

'lego audio video erro ergo disco' or "I read, I listen, I watch, I make mistakes, therefore I learn"